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数据分析 使用 Intogen 框架的详细信息和代码可在此处获得 (https://intogen.readthedocs.io/en/latest/index.html)。执行此分析的具体代码可在 Genomics England 研究环境中的 /re_gecip/shared_allGeCIPs/pancancer_drivers/ code/ 下找到。成为 Genomics England 研究网络成员并获得访问权限的链接可在此处找到 https:// www.genomicsengland.co.uk/research/academic/join-gecip。执行 canSAR 化学基因组学分析的代码可通过 Zenodo (https://zenodo.org/record/8329054) 获得。使用的其他软件包/软件：VerifyBamID v1.1.3 = https://github.com/statgen/verifyBamID Ccube v1 = https://github.com/keyuan/ccube Isaac aligner v03.16.02.19 = https://github.com/Illumina/Isaac3 Strelka v2.4.7 = https://github.com/Illumina/strelka bcftools v1.9 = https://samtools.github.io/bcftools/bcftools.html alleleCount-FixVAF v4.1.0 = https://github.com/danchubb/alleleCount-FixVAF VEP v101 = https://github.com/Ensembl/ensembl-vep CADD v1.6 = https://github.com/kircherlab/CADD-scripts/ OncoKb v3.11 = https://www.oncokb.org/api-access trackViewer v1.38.2 = https://github.com/jianhong/trackViewer mSINGS = https://bitbucket.org/uwlabmed/msings/src/master/ HRDetect = https://github.com/eyzhao/hrdetect-pipeline
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